When it comes to minor league and amateur baseball, scouting box scores tells only a piece of the story. In mid-April, I had the opportunity to travel to Greenville, S.C., to see West Virginia Pirates right-hander Clay Holmes. Five days later, North Carolina State ace Carlos Rodon pitched the Saturday night game at Georgia Tech. As of today, Rodon is the top prospect in the 2014 draft.

Admittedly, my last NCAA baseball game was in 2011, when now-Mariners prospect Danny Hultzen faced off against now-Padres prospect Mark Pope. Carson Cistulli would shame me in public for my general lack of interest in the college game, but that lack of familiarity is a driving factor for this piece.

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If you knew Emilio Bonifacio’s younger brother was an outfield prospect in the Kansas City Royals’ farm system, you might assume the two are roughly similar. But Emilio — a speedy, switch-hitting, utility man for the Toronto Blue Jays — and Jorge have little in common, at least when it comes to their games. Jorge, the younger of the pair, is a burly right fielder with a strong arm. He was enjoying an excellent campaign as a 19-year-old in the Carolina League when he broke his hamate bone Tuesday during batting practice. Reports suggest he’ll miss six to eight weeks.

It’s difficult to say how the injury will affect his development. Even after returning to the field, the alleged power-sapping effects of a hamate break can linger. Whether appropriate or not, the injury will cast a shadow over the rest of his season.

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It’s always fun to stumble upon a great pitching duel. Recently, I was able to take in the game between two top pitching prospects at the Double-A level on May 2: Cleveland’s Danny Salazar and Pittsburgh’s Jameson Taillon. Both hurlers come from very different backgrounds. Salazar signed as an amateur free agent out of Venezuela in 2006 but saw his career derailed by injuries, including Tommy John surgery in 2010. I ranked him as the seventh-best prospect in Cleveland’s system enter the 2013 season. Taillon was a higher-profile amateur pitcher as the second overall selection in the 2010 draft. I ranked the right-hander as the second-best prospect in the Pirates’ system prior to the start of the season.

Salazar, now 23, was absolutely dominant on this night. He allowed just three base runners (one hit, two walks) and 12 of his 18 outs were recorded via the strikeout. The right-hander overpowered the opposing hitters with his fastball/curveball combination — even though he struggled with the command of his heater.

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The 2013 season is still in its infancy but two organizations have already faced more than their fair share of struggles in their minor league systems. The Texas Rangers entered the year with one of the better systems in baseball, while the Toronto Blue Jays fell somewhere in the middle after nearly gutting the system in what may amount to a misguided attempt to rebuild the big league team in one off-season.

Just 20 years old, shortstop Jurickson Profar has already spent time in the majors and he opened the 2013 season in triple-A. The Curacao native, who entered the year as the club’s No. 1 prospect, struggled out of the gate but he’s hardly embarrassed himself. It’s a different story for second overall prospect Mike Olt and his struggles have been well documented. He hit just .139 with 32 strikeouts in 20 games before hitting the disabled list with vision problems. He has excellent defensive skills at third base but lacks a spot at the big league level so his bat is going to have to pick up if he’s going to shift to a corner outfield spot of first base.

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Drafting 15th in 2012, the Indians selected Texas A&M right fielder Tyler Naquin. A collegiate standout, Naquin earned the Big 12 Player of the Year Award before Cleveland selected him and shifted him from right field — where he started 115 games as a freshman and sophomore — to center field. As Marc Hulet noted last month, Naquin’s ability to play his new position will determine his success.

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Ninety-nine — a number rarely seen once, let alone multiple times from the same pitcher. In his last start, Mauricio Cabrera touched 99 mph enough for teammates charting in the stands to chuckle and shake their heads in disbelief.

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“I’m working on catching balls in the pocket,” Pirates’ minor league catcher Wyatt Mathisen told me as we talked about the nuances of his game outside the Greenville Drive locker room last month. Mathisen’s candor left me speechless. When you’re talking to a professional baseball player, there are some things you just assume. And one of those is the ability to catch a ball properly.

So where does he go from here — this 19-year-old converted shortstop, this catcher under construction? Talk to Mathisen for a few minutes and you see a young man who acknowledges his weaknesses; but there’s also a ballplayer who’s eager to improve.

Video after the jump:

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With a month of the minor league season in the books, chat questions are already rolling in about who the top prospect will be in 2014. Each month, I’ll take a look at players who were close in 2013 (we’ll call them “Headliners”), plus fast risers who are staking an early claim to the top spot (we’ll call them “Opening Acts”).

To begin this exercise, it’s important to understand where the number one pick comes from. Since 1990, Baseball America has been releasing its top-100 prospects list. Below is a chart of the year, number-one prospect, and where he ranked the year previous. Read the rest of this entry »

Two Double-A starting pitchers with volatile prospect values faced each other on May 1. Noel Arguelles of the Kansas City Royals and Seth Blair of the St. Louis Cardinals are in the midst of make-or-break seasons.

Cuban native Arguelles signed a massive five-year, big-league contract as an international amateur free agent in January of 2010. It will pay him $7 million over the life of the contract. The southpaw injured his shoulder before getting into an official game, underwent surgery and later made his debut in High-A ball in 2011. His stuff never fully rebounded, though, and his fastball went from averaging 89-93 mph to working more in the 87-90 mph range.

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The Mets’ farm system rates in the top third of baseball due to a plethora of pitching prospects. In addition to Zack Wheeler, Rafael Montero and Cory Mazzoni in the upper minors, the organization’s Florida State League affiliate has the minor leagues’ best rotation. It features Noah Syndergaard, Domingo Tapia, Luis Mateo (who is on the disabled list with an elbow injury), Michael Fulmer (DL – Meniscus) and Hansel Robles. The Savannah Sand Gnats are stocked with intriguing arms as well. Mike Newman recently discussed Gabriel Ynoa and Rainy Lara with his audience, and I mentioned the resurgence of Steven Matz several weeks ago. Read the rest of this entry »